Collaborative involvement of woody plant roots and rhizosphere microorganisms in the formation of pedogenetic clays.
Identifieur interne : 000081 ( Main/Exploration ); précédent : 000080; suivant : 000082Collaborative involvement of woody plant roots and rhizosphere microorganisms in the formation of pedogenetic clays.
Auteurs : Frank Reith [Australie] ; William Verboom [Australie] ; John Pate [Australie] ; David Chittleborough [Australie]Source :
- Annals of botany [ 1095-8290 ] ; 2019.
Descripteurs français
- KwdFr :
- MESH :
- Wicri :
- geographic : Australie.
English descriptors
- KwdEn :
- MESH :
- chemical : Clay, RNA, Ribosomal, 16S.
- geographic : Australia.
- Plant Roots, Rhizosphere, Soil Microbiology.
Abstract
BACKGROUND AND AIMS
Previous studies have described the laying down of specific B horizons in south-western Australian ecosystems. This paper presents biomolecular, morphological and physicochemical analyses elucidating the roles of specific woody plant taxa and rhizosphere bacteria in producing these phenomena.
METHODS
Clayey deposits within lateral root systems of eucalypts and appropriate background soil samples were collected aseptically at multiple locations on sand dunes flanking Lake Chillinup. Bacterial communities were profiled using tagged next-generation sequencing (Miseq) of the 16S rRNA gene and assigned to operational taxonomic units. Sedimentation, selective dissolution and X-ray diffraction analyses quantitatively identified clay mineral components. Comparisons were made of pedological features between the above eucalypt systems, giant podzols under proteaceous woodland on sand dunes at the study site of Jandakot and apparently similar systems observed elsewhere in the world.
KEY RESULTS
Bacterial communities in clay pods are highly diverse, resolving into 569 operational taxonomic units dominated by Actinobacteria at 38.0-87.4 % of the total reads. Multivariate statistical analyses of community fingerprints demonstrated substrate specificity. Differently coloured pods on the same host taxon carry distinctive microfloras correlated to diversities and abundances of Actinobacteria, Acidobacteria, Firmicutes and Proteobacteria. A number of these microbes are known to form biominerals, such as phyllosilicates, carbonates and Fe-oxides. A biogenic origin is suggested for the dominant identified mineral precipitates, namely illite and kaolinite. Comparisons of morphogenetic features of B horizons under eucalypts, tree banksias and other vegetation types show remarkably similar developmental trajectories involving pods of precipitation surrounding specialized fine rootlets and their orderly growth to form a continuous B horizon.
CONCLUSIONS
The paper strongly supports the hypothesis that B-horizon development is mediated by highly sophisticated interactions of host plant and rhizosphere organisms in which woody plant taxa govern overall morphogenesis and supply of mineral elements for precipitation, while rhizosphere microorganisms execute biomineralization processes.
DOI: 10.1093/aob/mcz065
PubMed: 31147694
PubMed Central: PMC6881225
Affiliations:
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Reith</name><affiliation wicri:level="1"><nlm:affiliation>School of Biological Sciences, The University of Adelaide, Adelaide, South Australia, Australia.</nlm:affiliation><country xml:lang="fr">Australie</country><wicri:regionArea>School of Biological Sciences, The University of Adelaide, Adelaide, South Australia</wicri:regionArea><wicri:noRegion>South Australia</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>CSIRO Land and Water, Contaminant Chemistry and Ecotoxicology, PMB2 Glen Osmond, South Australia, Australia.</nlm:affiliation><country xml:lang="fr">Australie</country><wicri:regionArea>CSIRO Land and Water, Contaminant Chemistry and Ecotoxicology, PMB2 Glen Osmond, South Australia</wicri:regionArea><wicri:noRegion>South Australia</wicri:noRegion></affiliation></author><author><name sortKey="Verboom, William" sort="Verboom, William" uniqKey="Verboom W" first="William" last="Verboom">William Verboom</name><affiliation wicri:level="1"><nlm:affiliation>School of Biological Sciences, The University of Western Australia, Perth, Australia.</nlm:affiliation><country xml:lang="fr">Australie</country><wicri:regionArea>School of Biological Sciences, The University of Western Australia, Perth</wicri:regionArea><wicri:noRegion>Perth</wicri:noRegion></affiliation></author><author><name sortKey="Pate, John" sort="Pate, John" uniqKey="Pate J" first="John" last="Pate">John Pate</name><affiliation wicri:level="1"><nlm:affiliation>School of Biological Sciences, The University of Western Australia, Perth, Australia.</nlm:affiliation><country xml:lang="fr">Australie</country><wicri:regionArea>School of Biological Sciences, The University of Western Australia, Perth</wicri:regionArea><wicri:noRegion>Perth</wicri:noRegion></affiliation></author><author><name sortKey="Chittleborough, David" sort="Chittleborough, David" uniqKey="Chittleborough D" first="David" last="Chittleborough">David Chittleborough</name><affiliation wicri:level="1"><nlm:affiliation>School of Physical Sciences, The University of Adelaide, Adelaide, South Australia, Australia.</nlm:affiliation><country xml:lang="fr">Australie</country><wicri:regionArea>School of Physical Sciences, The University of Adelaide, Adelaide, South Australia</wicri:regionArea><wicri:noRegion>South Australia</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>Sustainability Research Centre, The University of the Sunshine Coast, Sippy Downs, Queensland, Australia.</nlm:affiliation><country xml:lang="fr">Australie</country><wicri:regionArea>Sustainability Research Centre, The University of the Sunshine Coast, Sippy Downs, Queensland</wicri:regionArea><wicri:noRegion>Queensland</wicri:noRegion></affiliation></author></analytic><series><title level="j">Annals of botany</title><idno type="eISSN">1095-8290</idno><imprint><date when="2019" type="published">2019</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Australia (MeSH)</term><term>Clay (MeSH)</term><term>Plant Roots (MeSH)</term><term>RNA, Ribosomal, 16S (MeSH)</term><term>Rhizosphere (MeSH)</term><term>Soil Microbiology (MeSH)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>ARN ribosomique 16S (MeSH)</term><term>Argile (MeSH)</term><term>Australie (MeSH)</term><term>Microbiologie du sol (MeSH)</term><term>Racines de plante (MeSH)</term><term>Rhizosphère (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" xml:lang="en"><term>Clay</term><term>RNA, Ribosomal, 16S</term></keywords><keywords scheme="MESH" type="geographic" xml:lang="en"><term>Australia</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Plant Roots</term><term>Rhizosphere</term><term>Soil Microbiology</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>ARN ribosomique 16S</term><term>Argile</term><term>Australie</term><term>Microbiologie du sol</term><term>Racines de plante</term><term>Rhizosphère</term></keywords><keywords scheme="Wicri" type="geographic" xml:lang="fr"><term>Australie</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p><b>BACKGROUND AND AIMS</b></p><p>Previous studies have described the laying down of specific B horizons in south-western Australian ecosystems. This paper presents biomolecular, morphological and physicochemical analyses elucidating the roles of specific woody plant taxa and rhizosphere bacteria in producing these phenomena.</p></div><div type="abstract" xml:lang="en"><p><b>METHODS</b></p><p>Clayey deposits within lateral root systems of eucalypts and appropriate background soil samples were collected aseptically at multiple locations on sand dunes flanking Lake Chillinup. Bacterial communities were profiled using tagged next-generation sequencing (Miseq) of the 16S rRNA gene and assigned to operational taxonomic units. Sedimentation, selective dissolution and X-ray diffraction analyses quantitatively identified clay mineral components. Comparisons were made of pedological features between the above eucalypt systems, giant podzols under proteaceous woodland on sand dunes at the study site of Jandakot and apparently similar systems observed elsewhere in the world.</p></div><div type="abstract" xml:lang="en"><p><b>KEY RESULTS</b></p><p>Bacterial communities in clay pods are highly diverse, resolving into 569 operational taxonomic units dominated by Actinobacteria at 38.0-87.4 % of the total reads. Multivariate statistical analyses of community fingerprints demonstrated substrate specificity. Differently coloured pods on the same host taxon carry distinctive microfloras correlated to diversities and abundances of Actinobacteria, Acidobacteria, Firmicutes and Proteobacteria. A number of these microbes are known to form biominerals, such as phyllosilicates, carbonates and Fe-oxides. A biogenic origin is suggested for the dominant identified mineral precipitates, namely illite and kaolinite. Comparisons of morphogenetic features of B horizons under eucalypts, tree banksias and other vegetation types show remarkably similar developmental trajectories involving pods of precipitation surrounding specialized fine rootlets and their orderly growth to form a continuous B horizon.</p></div><div type="abstract" xml:lang="en"><p><b>CONCLUSIONS</b></p><p>The paper strongly supports the hypothesis that B-horizon development is mediated by highly sophisticated interactions of host plant and rhizosphere organisms in which woody plant taxa govern overall morphogenesis and supply of mineral elements for precipitation, while rhizosphere microorganisms execute biomineralization processes.</p></div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" IndexingMethod="Automated" Owner="NLM"><PMID Version="1">31147694</PMID><DateCompleted><Year>2020</Year><Month>03</Month><Day>18</Day></DateCompleted><DateRevised><Year>2020</Year><Month>03</Month><Day>18</Day></DateRevised><Article PubModel="Print"><Journal><ISSN IssnType="Electronic">1095-8290</ISSN><JournalIssue CitedMedium="Internet"><Volume>124</Volume><Issue>6</Issue><PubDate><Year>2019</Year><Month>11</Month><Day>27</Day></PubDate></JournalIssue><Title>Annals of botany</Title><ISOAbbreviation>Ann Bot</ISOAbbreviation></Journal><ArticleTitle>Collaborative involvement of woody plant roots and rhizosphere microorganisms in the formation of pedogenetic clays.</ArticleTitle><Pagination><MedlinePgn>1007-1018</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1093/aob/mcz065</ELocationID><Abstract><AbstractText Label="BACKGROUND AND AIMS">Previous studies have described the laying down of specific B horizons in south-western Australian ecosystems. This paper presents biomolecular, morphological and physicochemical analyses elucidating the roles of specific woody plant taxa and rhizosphere bacteria in producing these phenomena.</AbstractText><AbstractText Label="METHODS">Clayey deposits within lateral root systems of eucalypts and appropriate background soil samples were collected aseptically at multiple locations on sand dunes flanking Lake Chillinup. Bacterial communities were profiled using tagged next-generation sequencing (Miseq) of the 16S rRNA gene and assigned to operational taxonomic units. Sedimentation, selective dissolution and X-ray diffraction analyses quantitatively identified clay mineral components. Comparisons were made of pedological features between the above eucalypt systems, giant podzols under proteaceous woodland on sand dunes at the study site of Jandakot and apparently similar systems observed elsewhere in the world.</AbstractText><AbstractText Label="KEY RESULTS">Bacterial communities in clay pods are highly diverse, resolving into 569 operational taxonomic units dominated by Actinobacteria at 38.0-87.4 % of the total reads. Multivariate statistical analyses of community fingerprints demonstrated substrate specificity. Differently coloured pods on the same host taxon carry distinctive microfloras correlated to diversities and abundances of Actinobacteria, Acidobacteria, Firmicutes and Proteobacteria. A number of these microbes are known to form biominerals, such as phyllosilicates, carbonates and Fe-oxides. A biogenic origin is suggested for the dominant identified mineral precipitates, namely illite and kaolinite. Comparisons of morphogenetic features of B horizons under eucalypts, tree banksias and other vegetation types show remarkably similar developmental trajectories involving pods of precipitation surrounding specialized fine rootlets and their orderly growth to form a continuous B horizon.</AbstractText><AbstractText Label="CONCLUSIONS">The paper strongly supports the hypothesis that B-horizon development is mediated by highly sophisticated interactions of host plant and rhizosphere organisms in which woody plant taxa govern overall morphogenesis and supply of mineral elements for precipitation, while rhizosphere microorganisms execute biomineralization processes.</AbstractText><CopyrightInformation>© The Author(s) 2019. Published by Oxford University Press on behalf of the Annals of Botany Company. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Reith</LastName><ForeName>Frank</ForeName><Initials>F</Initials><AffiliationInfo><Affiliation>School of Biological Sciences, The University of Adelaide, Adelaide, South Australia, Australia.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>CSIRO Land and Water, Contaminant Chemistry and Ecotoxicology, PMB2 Glen Osmond, South Australia, Australia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Verboom</LastName><ForeName>William</ForeName><Initials>W</Initials><AffiliationInfo><Affiliation>School of Biological Sciences, The University of Western Australia, Perth, Australia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Pate</LastName><ForeName>John</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>School of Biological Sciences, The University of Western Australia, 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uniqKey="Reith F" first="Frank" last="Reith">Frank Reith</name><name sortKey="Verboom, William" sort="Verboom, William" uniqKey="Verboom W" first="William" last="Verboom">William Verboom</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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